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A. Valente et al.: A compilation of global bio-optical in situ data
Appendix B: Data avallability
The compiled data are available at
https://doi.0rg/10.1594/PANGAEA.941318 (Valente et
al., 2022). The database is composed of three main ta-
5les: table “insitudb_chla.csv” with the observations of
‘“chla_fluor” and “chla_hplc”; table “insitudb_rrs.csv” with
observations of “rrs”; and table “insitudb_iopskdtsm.csv”
with remaining observations (“aph”, “adg”, “bbp”, “kd”,
and “tsm”). The rows within the three tables relate to
each other via a unique key (column “idx”). The three
tables can be viewed conceptually as one table with
all data. To help with data manipulation, six auxiliary
tables derived from the previous three main tables are
provided. The table “insitudb_metadata.csv”” contains
all available metadata and helps, for example, to find
rows (ie. “idx”) with multiple variables (e.g. “rrs” and
“Chla_fluor”). The table “auxiliary_table_contributors.csv”
contains the number of observations per data contributor,
variable, and dataset. The remaining four tables (“insi-
‚udb_rrs_satbands2.csv”, “insitudb_rrs_satbands6.csv”,
“insitudb_iopskdtsm_satbands2.csv”, and “insi-
:udb_iopskdtsm_satbands6.csv””) contain the _spectral
data of the main tables (i.e. “insitudb_rrs.csv” and “insi-
tudb_iopskdtsm.csv”) aggregated within +2 and +6 nm,
respectively, of SeaWiFS, MODIS AQUA, MERIS, VIIRS-
SNPP, VIIRS-JPSS, OLCI-S3A, and OLCI-S3B sensor
Jands. The tables are generated by assigning, in each
:ow of the main tables (i.e. “insitudb_rrs.csv” and “in-
situdb_iopskdtsm.csv”), the closest spectral observation
within 2nm (or 6nm) of a sensor band. The centre wave-
jengths of each band and sensor used in the generation of
the files are the following: SeaWiFS bands 1-8 were centred
at [412, 443, 490, 510, 555, 670, 765, 865] nm, respectively;
MODIS-AQUA bands 1—9 were centred at [412, 443, 488,
531, 547, 667, 678, 748, 869]nm, respectively; MERIS
bands 1-13 were centred at [412, 442, 490, 510, 560,
620, 665, 681, 709, 753, 779, 865, 885] nm, respectively;
VIIRS-SNPP bands 1-6 were centred at [410, 443, 486, 551,
671, 746] nm, respectively; VIIRS-JPSS bands 1—6 were
centred at [411, 445, 489, 556, 667, 746] nm, respectively;
and OLCI-S3A and OLCI-S3B bands 1-15 were centred at
‚400, 412, 443, 490, 510, 560, 620, 665, 674, 681, 709, 754,
779, 865, 885] nm. An exception to this procedure was made
[0 confirm that the correct MOBY data are stored in the files
(see Sect. 2.2.1. for discussion on how MOBY wavelengths
are stored in the main file). Finally, a “readme” file is pro-
vided to help the user. Table 1 shows what the compiled data
looks like. An example of a query for available chlorophyll
data from subdataset “seabass_car81” is given.
zarth Syst. Sci. Data, 14, 5737-5770, 2022
httos://doi.org/10.5194/essd-14-5737-2022